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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6088813 1 rs6142373 chr20:33983314 CEP250 chr20:34042996-34099802:+ -0.15 -3.43 0.000658 Height
THCA cis rs6088813 1 rs6142373 chr20:33983314 CPNE1 chr20:34213968-34262539:- 0.31 5.96 4.83E-9 Height
THCA cis rs6088813 1 rs6142373 chr20:33983314 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000159 Height
THCA cis rs6088813 1 rs6142373 chr20:33983314 UQCC chr20:33890383-33999833:- 0.32 10.39 6.2E-23 Height
THCA cis rs6088813 1 rs6142374 chr20:33985568 CPNE1 chr20:34213968-34262539:- 0.3 5.93 5.9E-9 Height
THCA cis rs6088813 1 rs6142374 chr20:33985568 GDF5 chr20:33897002-34042568:- -0.18 -4.01 7.04E-5 Height
THCA cis rs6088813 1 rs6142374 chr20:33985568 UQCC chr20:33890383-33999833:- 0.32 10.27 1.7E-22 Height
THCA cis rs6088813 1 rs6142376 chr20:33992761 CEP250 chr20:34042996-34099802:+ -0.15 -3.46 0.000592 Height
THCA cis rs6088813 1 rs6142376 chr20:33992761 CPNE1 chr20:34213968-34262539:- 0.31 6.02 3.39E-9 Height
THCA cis rs6088813 1 rs6142376 chr20:33992761 GDF5 chr20:33897002-34042568:- -0.19 -4.13 4.21E-5 Height
THCA cis rs6088813 1 rs6142376 chr20:33992761 UQCC chr20:33890383-33999833:- 0.32 10.23 2.44E-22 Height
THCA cis rs6088813 1 rs6142379 chr20:33999267 CPNE1 chr20:34213968-34262539:- 0.3 5.93 5.97E-9 Height
THCA cis rs6088813 1 rs6142379 chr20:33999267 GDF5 chr20:33897002-34042568:- -0.18 -3.96 8.7E-5 Height
THCA cis rs6088813 1 rs6142379 chr20:33999267 UQCC chr20:33890383-33999833:- 0.32 10.25 1.96E-22 Height
THCA cis rs4959799 1 rs61439128 chr6:3291116 PSMG4 chr6:3259162-3268300:+ -0.33 -5.52 5.44E-8 Survival in rectal cancer